Publications

Regional specialization manifests in the reliability of neural population codes.

Guidera JA, Gramling DP, Comrie AE, Joshi A, Denovellis EL, Lee KH, Zhou J, Thompson P, Hernandez J, Yorita A, Haque R, Kirst C, Frank LM

2024
Spyglass: a data analysis framework for reproducible and shareable neuroscience research.

Lee KH, Denovellis E, Ly R, Magland J, Soules J, Comrie AE, Gramling DP, Guidera JA, Nevers R, Adenekan P, Brozdowski C, Bray S, Monroe E, Bak JH, Coulter M, Sun X, Tritt A, Rübel O, Nguyen T, Yatsenko D, Chu J, Kemere C, Garcia S, Buccino A, Frank LM

2024
Cell type specificity of mosaic chromosome 1q gain resolved by snRNA-seq in a case of epilepsy with hyaline protoplasmic astrocytopathy.

Leng K, Cadwell CR, Devine WP, Tihan T, Qi Z, Singhal N, Glenn O, Kamiya S, Wiita A, Berger A, Shieh JT, Titus EW, Paredes MF, Upadhyay V

2024
Identifying and modulating neural signatures of stress susceptibility and resilience enables control of anhedonia.

Xia F, Fascianelli V, Vishwakarma N, Ghinger FG, Fusi S, Kheirbek MA

2024
Identification and In Vivo Evaluation of Myelination Agent PIPE-3297, a Selective Kappa Opioid Receptor Agonist Devoid of β-Arrestin-2 Recruitment Efficacy.

Schrader TO, Lorrain KI, Bagnol D, Edu GC, Broadhead A, Baccei C, Poon MM, Stebbins KJ, Xiong Y, Lorenzana AO, Chan JR, Green AJ, Lorrain DS, Chen A

2024
PRDM16 co-operates with LHX2 to shape the human brain.

Suresh V, Bhattacharya B, Tshuva RY, Danan Gotthold M, Olender T, Bose M, Pradhan SJ, Zeev BB, Smith RS, Tole S, Galande S, Harwell CC, Baizabal JM, Reiner O

2024
Optimal trade-off control in machine learning-based library design, with application to adeno-associated virus (AAV) for gene therapy.

Zhu D, Brookes DH, Busia A, Carneiro A, Fannjiang C, Popova G, Shin D, Donohue KC, Lin LF, Miller ZM, Williams ER, Chang EF, Nowakowski TJ, Listgarten J, Schaffer DV

2024
Worse Depression Profiles Are Associated With Higher Symptom Burden and Poorer Quality of Life in Patients With Gynecologic Cancer.

Calvo-Schimmel A, Hammer MJ, Wright AA, Blank SV, Cohen B, Harris C, Shin J, Conley Y, Paul S, Cooper B, Levine JD, Miaskowski C

2024
CHOIR improves significance-based detection of cell types and states from single-cell data.

Petersen C, Mucke L, Corces MR

2024
Higher Levels of Multiple Types of Stress Are Associated With Worse State Anxiety and Morning Fatigue Profiles in Patients Receiving Chemotherapy.

Garcia P, Block A, Mark S, Mackin L, Paul SM, Cooper BA, Conley YP, Hammer MJ, Levine JD, Miaskowski C

2024

Pages